About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_44130570_44131931_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
44130570 - 44131931
Intron Length:
1362

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGCACG
5'SS Class:
major
3'SS Sequence:
ATTTCTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTCTCCCTGATT
Flanking Amino Acid:
AKLQSGTAYLLGKPPLQWIN
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.1
61
43.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
87.1
0.83
0.7
81.6
29.6
Minor 5ss
42.3
-0.9
2.8
56.2
42
Minor BPS
66.9
0.61
1.7
83.85
37.3

Associated Gene:

Gene:
PTCH1
Ensembl Gene ID:
ENSAPLG00000012739
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013331
44094568 - 44155660
61093
ENSAPLT00000023798
44096344 - 44155709
59366