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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_44132223_44133489_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

44132223 - 44133489

Intron Length:

1267

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGGGA

5'SS Class:

strong_major

3'SS Sequence:

ATCTTTATTACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTTAT

U12 Branch Point Sequence:

TGTTCTTTATCT

Flanking Amino Acid:

ASRVHVYMYNRQWKLEHLCY

Intron Amino Acid Position:

172

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.5

0.91

0.9

73.1

38.2

Major BPS

83.9

0.84

73.9

41.3

Major PPT

0.74

0.8

77.2

35.2

Minor 5ss

28.6

-2.5

3.5

46.8

Minor BPS

74.4

0.84

1.5

88.63

36.3

Associated Gene:

Gene:

PTCH1

Ensembl Gene ID:

ENSAPLG00000012739

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023798

44096344 - 44155709

59366

ENSAPLT00000013331

44094568 - 44155660

61093