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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_44296250_44299491_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
44296250 - 44299491
Intron Length:
3242

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGCG
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCCCTCCACA
Flanking Amino Acid:
MCEATAGRWHVGEKCV
Intron Amino Acid Position:
7

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
66.5
39.1
Major BPS
100
1.24
0.5
100
0
Major PPT
81.8
0.72
0.7
76.5
25.7
Minor 5ss
24.1
-3
3.2
29.4
43.5
Minor BPS
59.9
0.31
2
77.44
39.2

Associated Gene:

Gene:
ERCC6L2
Ensembl Gene ID:
ENSAPLG00000006105
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006439
44295694 - 44348838
53145
ENSAPLT00000006348
44295694 - 44348748
53055
ENSAPLT00000023532
44295694 - 44349580
53887