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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_44302826_44304212_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44302826 - 44304212
Intron Length:
1387

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACATCTT
5'SS Class:
major
3'SS Sequence:
TGTTTGTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
TTTTCAGTAATA
Flanking Amino Acid:
KKESKYSPKKPFLIVAPLSV
Intron Amino Acid Position:
189

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
75.3
40.7
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
87
0.83
0.8
84.6
36
Minor 5ss
38.4
-1.3
3.4
58.7
45.8
Minor BPS
60.2
0.32
2.2
80.44
35.6

Associated Gene:

Gene:
ERCC6L2
Ensembl Gene ID:
ENSAPLG00000006105
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023532
44295694 - 44349580
53887
ENSAPLT00000006439
44295694 - 44348838
53145
ENSAPLT00000006348
44295694 - 44348748
53055