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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_44306846_44308320_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
44306846 - 44308320
Intron Length:
1475

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAATAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCCTAC
U12 Branch Point Sequence:
TTTTTTTTAACA
Flanking Amino Acid:
NMKELWCVMDWAVPGLLGSR
Intron Amino Acid Position:
307

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
0.9
78.3
30.5
Major BPS
48.5
-0
1.3
46.3
38.4
Major PPT
90.7
0.92
0.7
88.7
26.8
Minor 5ss
34.5
-1.8
2.8
38.6
41.7
Minor BPS
86.3
1.14
0.8
90.59
23.6

Associated Gene:

Gene:
ERCC6L2
Ensembl Gene ID:
ENSAPLG00000006105
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023532
44295694 - 44349580
53887
ENSAPLT00000006439
44295694 - 44348838
53145