Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_44311852_44313146_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

44311852 - 44313146

Intron Length:

1295

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTAGTTTC

5'SS Class:

strong_major

3'SS Sequence:

GCTTTTCTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

CCTATTCAAACT

Flanking Amino Acid:

LQTDNASKQQEAHIKRVCSE

Intron Amino Acid Position:

408

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.4

0.83

1.1

83.4

29.3

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

0.83

0.7

84.6

30.3

Minor 5ss

41.1

-1

2.7

53.3

43.9

Minor BPS

44.2

-0.3

1.9

59.97

44.1

Associated Gene:

Gene:

ERCC6L2

Ensembl Gene ID:

ENSAPLG00000006105

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023532

44295694 - 44349580

53887

ENSAPLT00000006439

44295694 - 44348838

53145

ENSAPLT00000006348

44295694 - 44348748

53055