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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_44320927_44326747_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
44320927 - 44326747
Intron Length:
5821

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
TTTATGTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTGTTTTATGT
Flanking Amino Acid:
QEINICLVSTMAGGLGLNFV
Intron Amino Acid Position:
520

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
76
28.7
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
83
0.74
0.8
81.3
36.3
Minor 5ss
39.7
-1.2
3.1
51.8
45.1
Minor BPS
50.6
0.1
2
74.38
43.4

Associated Gene:

Gene:
ERCC6L2
Ensembl Gene ID:
ENSAPLG00000006105
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023532
44295694 - 44349580
53887
ENSAPLT00000006439
44295694 - 44348838
53145
ENSAPLT00000006348
44295694 - 44348748
53055