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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_44326844_44328211_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
44326844 - 44328211
Intron Length:
1368

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATTCT
5'SS Class:
major
3'SS Sequence:
ACTTTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TGTTTTTTAATA
Flanking Amino Acid:
NPANDLQAIDRAYRIGQCKD
Intron Amino Acid Position:
552

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
76.5
33
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
86.4
0.82
0.7
80.9
30.3
Minor 5ss
48.3
-0.2
2.6
68.1
42.9
Minor BPS
76.4
0.82
1
79.24
30.7

Associated Gene:

Gene:
ERCC6L2
Ensembl Gene ID:
ENSAPLG00000006105
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006439
44295694 - 44348838
53145
ENSAPLT00000006348
44295694 - 44348748
53055
ENSAPLT00000023532
44295694 - 44349580
53887