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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_44333142_44333830_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
44333142 - 44333830
Intron Length:
689

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAACTAGT
5'SS Class:
strong_major
3'SS Sequence:
CCTAATATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
ATTCTCCTAATA
Flanking Amino Acid:
HKVESMDKYLDGVQEVAYIH
Intron Amino Acid Position:
1061

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
1.1
81.8
38.5
Major BPS
79.4
0.73
1
80.1
32
Major PPT
74.1
0.54
0.9
69.8
39.9
Minor 5ss
43
-0.8
2.7
60.7
43.6
Minor BPS
59.9
0.31
1.6
71.79
33.7

Associated Gene:

Gene:
ERCC6L2
Ensembl Gene ID:
ENSAPLG00000006105
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023532
44295694 - 44349580
53887
ENSAPLT00000006439
44295694 - 44348838
53145
ENSAPLT00000006348
44295694 - 44348748
53055