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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_44333986_44346930_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44333986 - 44346930
Intron Length:
12945

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGAGA
5'SS Class:
strong_major
3'SS Sequence:
CTTGTTTTGCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
GTTGTTTTGACA
Flanking Amino Acid:
PANVTVCSAKKDEENSEEEM
Intron Amino Acid Position:
1113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
72
39.3
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
74
0.54
1
69.2
41.8
Minor 5ss
31
-2.2
3.2
40
45.7
Minor BPS
62.5
0.39
1.4
69.98
36.5

Associated Gene:

Gene:
ERCC6L2
Ensembl Gene ID:
ENSAPLG00000006105
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006439
44295694 - 44348838
53145
ENSAPLT00000006348
44295694 - 44348748
53055
ENSAPLT00000023532
44295694 - 44349580
53887