Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_44436365_44437386_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

44436365 - 44437386

Intron Length:

1022

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAATTTTT

5'SS Class:

strong_major

3'SS Sequence:

AATTCAATTTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTAAAT

U12 Branch Point Sequence:

AACTATTTAAAT

Flanking Amino Acid:

TQIILKQMEPRQKGLILNLS

Intron Amino Acid Position:

185

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.9

0.92

0.9

89.8

23.7

Major BPS

82.3

0.8

0.9

87.6

25.7

Major PPT

73.1

0.52

68.2

41.5

Minor 5ss

46.2

-0.4

2.8

67.4

43.6

Minor BPS

0.3

1.6

69.93

40.6

Associated Gene:

Gene:

HSD17B3

Ensembl Gene ID:

ENSAPLG00000006227

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026817

44433280 - 44456181

22902

ENSAPLT00000006445

44432903 - 44456181

23279