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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_44448028_44453843_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44448028 - 44453843
Intron Length:
5816

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATAG
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
ACTTTTATATTC
Flanking Amino Acid:
DGLGKAYSFELAKRGLNVVM
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
77.7
33.3
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
85.8
0.8
0.7
80.4
24.8
Minor 5ss
37.3
-1.4
3
46.6
48.7
Minor BPS
46.6
-0.2
1.7
56.43
36.8

Associated Gene:

Gene:
HSD17B3
Ensembl Gene ID:
ENSAPLG00000006227
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026817
44433280 - 44456181
22902
ENSAPLT00000006445
44432903 - 44456181
23279