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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_44459793_44461057_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
44459793 - 44461057
Intron Length:
1265

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTGCT
5'SS Class:
major
3'SS Sequence:
TTTTTTTAAATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAAAT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
74.3
34.2
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
79.4
0.66
0.9
78.4
33.9
Minor 5ss
43.1
-0.8
3.1
59
39.8
Minor BPS
79.5
1
1.2
92.62
29

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024320
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020482
44459589 - 44475881
16293