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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_44461201_44461852_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
44461201 - 44461852
Intron Length:
652

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTTCTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAA
U12 Branch Point Sequence:
GAATCTCTGACA
Flanking Amino Acid:
SMLNFIGLNICMAGGLRYSF
Intron Amino Acid Position:
241

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.8
35.2
Major BPS
79
0.72
1
80.3
31.7
Major PPT
85
0.79
0.6
84.6
23.3
Minor 5ss
29.8
-2.3
2.6
30.5
37.5
Minor BPS
52.7
0.08
1.6
61.72
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024320
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020482
44459589 - 44475881
16293