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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_44464820_44465858_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44464820 - 44465858
Intron Length:
1039

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTAAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAA
U12 Branch Point Sequence:
CTTTGTTTAAAT
Flanking Amino Acid:
ISFSTGDFQQATHFQHWTNF
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.2
39.9
Major BPS
72.1
0.55
1.1
63.7
43.9
Major PPT
72.8
0.51
1
70.7
39.1
Minor 5ss
39.7
-1.2
2.9
52.1
44.7
Minor BPS
62.5
0.47
1.9
80.63
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024320
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020482
44459589 - 44475881
16293