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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_44468542_44470120_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
44468542 - 44470120
Intron Length:
1579

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGATTTTA
5'SS Class:
major
3'SS Sequence:
ATTTTGTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
AAAACGTGAACT
Flanking Amino Acid:
LTLLLEIIILGKRYPLSIFI
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
73
34.2
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
83.4
0.75
0.8
77.1
36.6
Minor 5ss
38
-1.4
2.9
40.9
45.4
Minor BPS
47.9
-0
2.2
66.85
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024320
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020482
44459589 - 44475881
16293