About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_44470193_44472329_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
44470193 - 44472329
Intron Length:
2137

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAGTAA
5'SS Class:
major
3'SS Sequence:
TTTATTTTGACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTATTTTGACA
Flanking Amino Acid:
ISGLSSTSKLSLPMFTVLRK
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
66.9
34.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
82.6
0.73
1
80
37.5
Minor 5ss
41.5
-0.9
3.2
54.8
49.4
Minor BPS
70.2
0.63
1.2
78.33
31.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024320
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020482
44459589 - 44475881
16293