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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_44483923_44484532_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
44483923 - 44484532
Intron Length:
610

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TTTGATTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TATTTCAAAAAC
Flanking Amino Acid:
DNKDVAEWLAKYWETREQRA
Intron Amino Acid Position:
320

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
78.6
29.6
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
81.3
0.7
0.8
73.8
41.4
Minor 5ss
43.2
-0.7
2.7
54.4
36.6
Minor BPS
48.5
-0.1
2
65.55
39.6

Associated Gene:

Gene:
ZNF367
Ensembl Gene ID:
ENSAPLG00000025910
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026540
44482521 - 44487412
4892