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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_44507455_44507638_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
44507455 - 44507638
Intron Length:
184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTCTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
AAGCTCTTAAAG
Flanking Amino Acid:
EFERQSGNDKTGVRAVDKKG
Intron Amino Acid Position:
193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1.2
85.2
32.2
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
84.7
0.78
0.7
78
30.8
Minor 5ss
40
-1.1
3.4
57.4
40.7
Minor BPS
54
-0
1.5
53.7
40.7

Associated Gene:

Gene:
HABP4
Ensembl Gene ID:
ENSAPLG00000008194
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008515
44497953 - 44519627
21675