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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_44533267_44542383_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
44533267 - 44542383
Intron Length:
9117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTCCG
5'SS Class:
major
3'SS Sequence:
CTACCCTTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
TTTTTCCTACCC
Flanking Amino Acid:
QAKATAASPLTVIPQSSVQK
Intron Amino Acid Position:
458

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1.3
66.3
45.2
Major BPS
79
0.72
1
78.4
31.2
Major PPT
79.9
0.67
0.8
76.7
31.6
Minor 5ss
35.9
-1.6
2.8
42.1
37.5
Minor BPS
60.7
0.31
2
78.54
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007708
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008035
44530726 - 44572333
41608