Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_44539784_44542383_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

44539784 - 44542383

Intron Length:

2600

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAC|GTAAGTCCG

5'SS Class:

major

3'SS Sequence:

ACCCCTTTTTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTCAC

U12 Branch Point Sequence:

TTTTGTTCACCT

Flanking Amino Acid:

QAKATAASPLTWLLAMLVST

Intron Amino Acid Position:

458

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.1

0.62

1.3

66.3

45.2

Major BPS

74.9

0.62

1.1

77.4

37.4

Major PPT

75.1

0.57

0.8

72.8

31.3

Minor 5ss

35.9

-1.6

2.8

42.1

37.5

Minor BPS

50.7

0.1

2.2

79.65

42.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000007708

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038324

44533217 - 44572333

39117

ENSAPLT00000030506

44529414 - 44572333

42920