About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_44542485_44543163_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44542485 - 44543163
Intron Length:
679

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCATC
5'SS Class:
strong_major
3'SS Sequence:
TACACTTCACTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
TTTCCCTACACT
Flanking Amino Acid:
RRMIRKDIELYSDEDETNCI
Intron Amino Acid Position:
425

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
77.9
36.8
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
62.8
0.29
0.9
55.8
39.6
Minor 5ss
44.1
-0.6
2.9
58
40.8
Minor BPS
60.9
0.42
2.1
85.35
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007708
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030506
44529414 - 44572333
42920
ENSAPLT00000020479
44529414 - 44572333
42920
ENSAPLT00000008035
44530726 - 44572333
41608
ENSAPLT00000038324
44533217 - 44572333
39117