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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_44543318_44543441_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
44543318 - 44543441
Intron Length:
124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
TATACTATGATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTTTTCTATACT
Flanking Amino Acid:
VIGPQQHFLMEKQAELWTEG
Intron Amino Acid Position:
373

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
71.7
40.1
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
63.2
0.3
1.1
58.8
41.4
Minor 5ss
36.4
-1.5
2.7
38.9
40.3
Minor BPS
64
0.52
2
87.49
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007708
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030506
44529414 - 44572333
42920
ENSAPLT00000022218
44542844 - 44572333
29490
ENSAPLT00000020479
44529414 - 44572333
42920
ENSAPLT00000008035
44530726 - 44572333
41608
ENSAPLT00000038324
44533217 - 44572333
39117