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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_44545863_44546791_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44545863 - 44546791
Intron Length:
929

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTGACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
TTTCTCTTGACA
Flanking Amino Acid:
FDVNEYEHYERAENGDFNWI
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.6
100
0
Major BPS
76.8
0.67
1
66
40.9
Major PPT
82.7
0.74
0.9
79.9
32.1
Minor 5ss
41.7
-0.9
2.9
59.7
44.8
Minor BPS
77.4
0.86
1.1
83.73
29.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007708
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008035
44530726 - 44572333
41608
ENSAPLT00000038324
44533217 - 44572333
39117
ENSAPLT00000030506
44529414 - 44572333
42920
ENSAPLT00000022218
44542844 - 44572333
29490
ENSAPLT00000020479
44529414 - 44572333
42920