Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_44578684_44579134_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

44578684 - 44579134

Intron Length:

451

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTGAGCGGG

5'SS Class:

major

3'SS Sequence:

GGCTGTGTTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATAACAT

U12 Branch Point Sequence:

CTGTTTGTGACA

Flanking Amino Acid:

QQKAIVVFVRSFLCYTCKEY

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.6

0.53

1.1

45.2

Major BPS

62.2

0.3

1.1

69.4

35.8

Major PPT

68.7

0.42

1.1

60.8

44.7

Minor 5ss

29.9

-2.3

3.2

29.1

43.5

Minor BPS

48.1

-0.1

60.48

40.6

Associated Gene:

Gene:

PRXL2C

Ensembl Gene ID:

ENSAPLG00000007699

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027839

44572802 - 44579314

6513

ENSAPLT00000007983

44575192 - 44579314

4123