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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_44608517_44609141_F

Intron Information:

Intron Rank:
148489
Intron Class:
major
Intron Phase:
Intron Coordinates:
44608517 - 44609141
Intron Length:
625

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATAT
5'SS Class:
strong_major
3'SS Sequence:
ACTTTATTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
TATACTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
80.1
28.2
Major BPS
75.1
0.62
1
65.6
41
Major PPT
80.3
0.68
0.8
78.2
34.6
Minor 5ss
39
-1.2
3.2
55.7
48.5
Minor BPS
62.5
0.47
1.6
77.73
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029943
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039094
44608283 - 44609963
1681