Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_44621672_44624232_R

Intron Information:

Intron Rank:

134526

Intron Class:

major

Intron Phase:

Intron Coordinates:

44621672 - 44624232

Intron Length:

2561

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAGAGGT

5'SS Class:

strong_major

3'SS Sequence:

CTTCTTTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCTGAG

U12 Branch Point Sequence:

GCTTGCTGAGTA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.6

0.72

72.7

37.1

Major BPS

52.2

0.06

1.6

51.1

46.3

Major PPT

91.7

0.94

0.6

87.6

22.6

Minor 5ss

33.9

-1.8

3.5

47.6

42.4

Minor BPS

45.7

-0.3

56.77

42.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019680

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027074

44620293 - 44630415

10123