Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_44642233_44653108_F

Intron Information:

Intron Rank:

130270

Intron Class:

major

Intron Phase:

Intron Coordinates:

44642233 - 44653108

Intron Length:

10876

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGATCA

5'SS Class:

strong_major

3'SS Sequence:

TTTTTCCCTGTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTATAAT

U12 Branch Point Sequence:

GTGACCTTCATG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.4

0.98

0.8

80.4

27.6

Major BPS

87.8

0.94

0.9

86.6

28.1

Major PPT

86.4

0.82

0.6

82.4

22.2

Minor 5ss

38.2

-1.3

48.6

47.1

Minor BPS

50.8

-0.1

1.9

56.66

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020066

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037122

44642090 - 44655037

12948