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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_44674598_44675414_R

Intron Information:

Intron Rank:
144816
Intron Class:
major
Intron Phase:
Intron Coordinates:
44674598 - 44675414
Intron Length:
817

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TTTCTCTGATGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
84.6
33.2
Major BPS
79
0.72
1
69
38.9
Major PPT
85.2
0.79
0.9
90.8
21.8
Minor 5ss
39.2
-1.2
2.8
51.8
39
Minor BPS
48.8
-0
2
73.9
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025293
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025533
44674142 - 44676272
2131