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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_44675558_44679133_R

Intron Information:

Intron Rank:
144821
Intron Class:
major
Intron Phase:
Intron Coordinates:
44675558 - 44679133
Intron Length:
3576

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTTCC
5'SS Class:
major
3'SS Sequence:
TTCTCTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
TTCTCTTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
69.9
35.6
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
87.1
0.83
0.7
83
25.6
Minor 5ss
43.7
-0.7
2.7
59.7
38.5
Minor BPS
68.9
0.59
1.7
78.6
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025293
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047472
44673077 - 44682598
9522