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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_44701595_44702610_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
44701595 - 44702610
Intron Length:
1016

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGGATT
5'SS Class:
strong_major
3'SS Sequence:
GATACTTTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTCTCTTTAACT
Flanking Amino Acid:
CLSEIMHENCELKREEEEIT
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
82.9
36.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
72.4
0.5
0.9
66.1
40.3
Minor 5ss
38.7
-1.3
3.4
58.5
45.8
Minor BPS
87.8
1.26
0.9
95.57
31.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007613
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007895
44701094 - 44705045
3952