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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_44702721_44702802_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
44702721 - 44702802
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTTTGACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCAAAT
U12 Branch Point Sequence:
TTGTCTTTGACA
Flanking Amino Acid:
GRYCEHDERQSNCGSIAHGA
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
83.1
28.4
Major BPS
55.9
0.15
1
61.2
32.6
Major PPT
78.8
0.65
1
76
38
Minor 5ss
34.5
-1.8
3.1
48.5
47.2
Minor BPS
78.7
0.9
1.1
81.99
33.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007613
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007895
44701094 - 44705045
3952