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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_44704134_44704690_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
44704134 - 44704690
Intron Length:
557

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTTTTAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTTATTT
Flanking Amino Acid:
MYRGKHVRILFTLTVVW
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.4
43.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
81.6
0.71
1
87.1
30.6
Minor 5ss
34.4
-1.8
3.4
46.7
48.6
Minor BPS
64.7
0.54
1.5
79.8
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007613
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007895
44701094 - 44705045
3952