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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_44743258_44769118_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
44743258 - 44769118
Intron Length:
25861

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
GTCACTATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
TTCACATAAACA
Flanking Amino Acid:
ELWTLVFFSSRIKQEWNFIL
Intron Amino Acid Position:
18

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
84.9
25
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
74.1
0.54
0.9
70
40.1
Minor 5ss
33
-1.9
3.2
42.9
44.7
Minor BPS
53.2
0.1
2
69.25
42.8

Associated Gene:

Gene:
LRRC2
Ensembl Gene ID:
ENSAPLG00000007466
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007755
44743057 - 44811685
68629