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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_44769330_44776847_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44769330 - 44776847
Intron Length:
7518

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAATATA
5'SS Class:
strong_major
3'SS Sequence:
ATCTTATTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATATAATC
Flanking Amino Acid:
IFQLSGQQWTEFPESLKDQT
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
80.8
33.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
83.1
0.74
0.8
76.8
35.8
Minor 5ss
39.1
-1.2
2.9
51.6
45.1
Minor BPS
56.4
0.18
1.7
70.71
34.2

Associated Gene:

Gene:
LRRC2
Ensembl Gene ID:
ENSAPLG00000007466
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007755
44743057 - 44811685
68629