Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_44787456_44805853_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

44787456 - 44805853

Intron Length:

18398

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTAAGATAA

5'SS Class:

strong_major

3'SS Sequence:

CACTTCTTTTTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AACTAAA

U12 Branch Point Sequence:

TGTAACTAAAAT

Flanking Amino Acid:

NMEIRELPFELSNLKQVTVV

Intron Amino Acid Position:

187

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.9

0.75

0.9

76.7

27.4

Major BPS

68.7

0.47

0.9

67.9

Major PPT

78.9

0.65

0.8

76.9

31.4

Minor 5ss

-1.2

3.1

47.5

42.5

Minor BPS

49.5

0.04

72.29

43.6

Associated Gene:

Gene:

LRRC2

Ensembl Gene ID:

ENSAPLG00000007466

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007755

44743057 - 44811685

68629