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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_44806000_44808722_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
44806000 - 44808722
Intron Length:
2723

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTTTTT
5'SS Class:
major
3'SS Sequence:
ATATTTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTATCCTTATCT
Flanking Amino Acid:
NLRDLPEDIDRLDQLQTLLL
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
80.7
34.7
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
81.8
0.72
0.8
77.2
36.3
Minor 5ss
44.8
-0.6
3.2
66.9
44.3
Minor BPS
79.8
1.01
1.5
93.17
35

Associated Gene:

Gene:
LRRC2
Ensembl Gene ID:
ENSAPLG00000007466
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007755
44743057 - 44811685
68629