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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_44808879_44810098_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
44808879 - 44810098
Intron Length:
1220

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
ATTCTCTCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTACAT
U12 Branch Point Sequence:
TTTGCATTACAT
Flanking Amino Acid:
TAICESTTGLKFISLKDSPV
Intron Amino Acid Position:
287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
86
23.6
Major BPS
73.9
0.59
1
81
30.2
Major PPT
80.4
0.68
0.7
78.5
29.6
Minor 5ss
36.8
-1.5
2.7
42.6
38.4
Minor BPS
52
0.14
2.1
78.39
43.5

Associated Gene:

Gene:
LRRC2
Ensembl Gene ID:
ENSAPLG00000007466
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007755
44743057 - 44811685
68629