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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_44810236_44811458_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
44810236 - 44811458
Intron Length:
1223

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTATGCGTT
5'SS Class:
major
3'SS Sequence:
TCTCTTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAC
U12 Branch Point Sequence:
TCTCTTTTCACA
Flanking Amino Acid:
KAYIEDLRERDSAPSYTTKV
Intron Amino Acid Position:
333

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1.1
68.8
42.3
Major BPS
69.1
0.48
1
70
32.1
Major PPT
87
0.83
0.7
82.8
25.8
Minor 5ss
47.9
-0.2
3.2
64.2
47.3
Minor BPS
55.6
0.17
1.7
67.58
39.4

Associated Gene:

Gene:
LRRC2
Ensembl Gene ID:
ENSAPLG00000007466
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007755
44743057 - 44811685
68629