Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_4481221_4481751_F

Intron Information:

Intron Rank:

123343

Intron Class:

major

Intron Phase:

Intron Coordinates:

4481221 - 4481751

Intron Length:

531

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCA|GTAAGAGCA

5'SS Class:

major

3'SS Sequence:

TTCTTTGTTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAATAAT

U12 Branch Point Sequence:

AAAATAATAGTT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.2

0.5

1.1

62.8

35.8

Major BPS

71.2

0.53

70.3

31.9

Major PPT

88.1

0.86

0.8

83.9

31.1

Minor 5ss

32.9

-1.9

3.4

45.4

43.3

Minor BPS

39.3

-0.7

1.8

51.6

35.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016502

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028892

4480030 - 4481920

1891