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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_4499159_4499608_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4499159 - 4499608
Intron Length:
450

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTACA
5'SS Class:
major
3'SS Sequence:
ATCTTGATATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TAATCATTAAAC
Flanking Amino Acid:
NRTCEVIRDGRFKNTKWKDI
Intron Amino Acid Position:
185

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.1
74.5
35.3
Major BPS
80
0.75
1
78.6
31
Major PPT
65.5
0.35
1
64.2
40.9
Minor 5ss
38.5
-1.3
2.3
44.3
43
Minor BPS
63.3
0.4
1.7
71.79
38.1

Associated Gene:

Gene:
ATP8B1
Ensembl Gene ID:
ENSAPLG00000002575
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008804
4495851 - 4517583
21733