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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_4543422_4543833_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4543422 - 4543833
Intron Length:
412

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
CCCTGTCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
CTGATGTTAATT
Flanking Amino Acid:
QYPQYSCSTTGSSLNAIYRY
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.8
72.1
31.2
Major BPS
84.4
0.85
1
84
34.5
Major PPT
79.3
0.66
0.8
75.9
32.7
Minor 5ss
26.3
-2.7
3.1
33.4
42
Minor BPS
49.4
0.03
2.1
67.41
44.2

Associated Gene:

Gene:
FECH
Ensembl Gene ID:
ENSAPLG00000015242
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015906
4537612 - 4547995
10384