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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_45434705_45438469_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
45434705 - 45438469
Intron Length:
3765

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATAGAG
5'SS Class:
major
3'SS Sequence:
TTTTTTTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATGCAA
U12 Branch Point Sequence:
AATTACTTGACT
Flanking Amino Acid:
VSQNDSAIIGGVIAVVIFIV
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
67.9
37.3
Major BPS
58
0.2
1.3
69.6
37.5
Major PPT
90.7
0.92
0.6
84.9
29.9
Minor 5ss
29.8
-2.3
3.3
38.1
46.8
Minor BPS
71.8
0.77
1.5
83.87
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005000
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005149
45434511 - 45439849
5339