Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_45438542_45438904_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

45438542 - 45438904

Intron Length:

363

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGCATTC

5'SS Class:

major

3'SS Sequence:

TTTTTTCCTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTGTAAT

U12 Branch Point Sequence:

TTTTCTGTAATT

Flanking Amino Acid:

TLSETTHSFADHSGPIDEGE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.3

0.46

1.2

66.9

Major BPS

72.1

0.55

1.2

73.3

39.1

Major PPT

93.3

0.97

0.6

89.3

19.4

Minor 5ss

46.7

-0.3

3.2

67.6

43.7

Minor BPS

70.8

0.73

91.31

32.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005000

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005149

45434511 - 45439849

5339