Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_45439104_45439774_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

45439104 - 45439774

Intron Length:

671

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCA|GTATGGAAA

5'SS Class:

major

3'SS Sequence:

TGATGTAGACGAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GTTTGAT

U12 Branch Point Sequence:

GTTTGATTAACA

Flanking Amino Acid:

VLNHTNFLIPETMKANSQGF

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.33

1.1

61.6

38.5

Major BPS

78.6

0.71

1.2

71.4

45.1

Major PPT

43.9

-0.3

1.7

40.9

46.9

Minor 5ss

39.9

-1.1

3.1

53.1

Minor BPS

62.4

0.38

77.59

38.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005000

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005149

45434511 - 45439849

5339