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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_4547374_4547860_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4547374 - 4547860
Intron Length:
487

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTTTG
5'SS Class:
major
3'SS Sequence:
AACTGTCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTAATTAACT
Flanking Amino Acid:
SLNGNPLFSKALADLVCSHI
Intron Amino Acid Position:
296

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
73.3
38.2
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
74.5
0.55
0.9
69.9
40.6
Minor 5ss
50
0
2.4
66.9
44.3
Minor BPS
74.8
0.86
1.7
94.75
31.4

Associated Gene:

Gene:
FECH
Ensembl Gene ID:
ENSAPLG00000015242
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015906
4537612 - 4547995
10384