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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_45474595_45480031_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
45474595 - 45480031
Intron Length:
5437

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
ACCTACCTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
TTTTCCCAAACC
Flanking Amino Acid:
CKKSRLLDKTDGLPLSWWIG
Intron Amino Acid Position:
829

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.9
1.13
0.6
92.3
16.1
Major BPS
71.2
0.53
1
61
37.5
Major PPT
70.3
0.46
0.8
66.4
34.7
Minor 5ss
35
-1.7
2.7
41.8
44.8
Minor BPS
65.9
0.48
2
83.46
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029241
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037556
45439109 - 45655437
216329
ENSAPLT00000036733
45439109 - 45655437
216329