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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_45480230_45485446_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
45480230 - 45485446
Intron Length:
5217

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGTGA
5'SS Class:
strong_major
3'SS Sequence:
CGTGTTTTGAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TCTTTATTATTT
Flanking Amino Acid:
GPFLVYCNMTDATWTIIQHN
Intron Amino Acid Position:
763

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
71.8
36.2
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
60.7
0.24
1.2
62.5
42.5
Minor 5ss
30.7
-2.2
3.2
38
46.8
Minor BPS
56.2
0.27
1.8
76.22
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029241
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036733
45439109 - 45655437
216329