Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_45485567_45487111_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

45485567 - 45487111

Intron Length:

1545

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATC|GTAAGTATA

5'SS Class:

major

3'SS Sequence:

TGTTCTTTTACAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTATGAT

U12 Branch Point Sequence:

TGTTCTTTTACA

Flanking Amino Acid:

TGYKGATCHYPIYEQSCESY

Intron Amino Acid Position:

723

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.4

0.57

1.3

79.8

35.3

Major BPS

84.6

0.86

41.2

Major PPT

89.1

0.88

0.7

83.7

31.3

Minor 5ss

40.8

-1

2.8

39.1

Minor BPS

71.8

0.68

1.6

80.12

35.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029241

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036733

45439109 - 45655437

216329