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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_45487219_45493278_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
45487219 - 45493278
Intron Length:
6060

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCGTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGAGAAT
U12 Branch Point Sequence:
AGAGTGAGAATG
Flanking Amino Acid:
LQIDLCGIIDRCLPNYCEHG
Intron Amino Acid Position:
687

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
49.1
-0
1.5
58
45.4
Major PPT
82.6
0.73
0.8
81.3
30.7
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
33.8
-1.3
2
32.67
33.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029241
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037556
45439109 - 45655437
216329
ENSAPLT00000036733
45439109 - 45655437
216329